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HHblits - Homology detection by iterative HMM-HMM comparison

Input

Paste protein sequence or multiple alignment
Search with pancreatitis induced protein PIP49. Paste example sequence.
or upload a local file
Select alignment format
Match state assignment
(For A2M/A3M format the match assignment of the input is used.)
 

Search Options

Select HMM database
Standard
Max. iterations
Alignment mode
 local  global 
Realign with MAC
MAC realignment threshold (0.0:global, >=0.1:local)
 

More options Show

Job Options

Job-ID
 (leave empty for automatic creation)
Send notification to (optional)
 
 
 
Please send feedback to: (toolkit) AT lmb.uni-muenchen.de